MmuEX6053675 @ mm9
Exon Skipping
Gene
ENSMUSG00000022371 | Col14a1
Description
collagen, type XIV, alpha 1 [Source:MGI Symbol;Acc:MGI:1341272]
Coordinates
chr15:55176425-55195125:+
Coord C1 exon
chr15:55176425-55176514
Coord A exon
chr15:55193937-55194092
Coord C2 exon
chr15:55195006-55195125
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTATGGTTTGCTCTTTGCAGAGG
3' ss Score
8.18
5' ss Seq
TCGGTAAAA
5' ss Score
5.48
Exon sequences
Seq C1 exon
TTAAAGATTTAGAGAAAAGAAAGGATCCAACAAAGCCCAAAGTCAAGGTTGTGGACAAAGGAAATGGAAGTAAACCAACTTCACCAGAAG
Seq A exon
AGGTAAAATTCTTCTGTGAGACTCCAGCCATCGCTGACATCGTCATCCTGGTGGATGGGTCGTGGAGTATTGGGAGGTTCAACTTCAGGCTTGTGCGCAATTTCTTGGAAAACCTGGTCACAGCGTTCAACGTGGGCTCAGAAAAGACAAGAATCG
Seq C2 exon
GCTTGGCACAGTACAGTGGGGACCCCAGAATAGAGTGGCACTTGAATGCCTTTAACACAAAAGATGAGGTGATTGATGCTGTCCGAAGCCTTCCATACAAAGGAGGAAATACCCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022371-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=PU(23.1=75.5)
C2:
PF0009223=VWA=FE(23.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGAGAAAAGAAAGGATCCAACAAA
R:
CTGTTAGGGTATTTCCTCCTTTGT
Band lengths:
202-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: