BtaEX6063655 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020120 | SEL1L2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:15897]
Coordinates
chr13:7596510-7606509:-
Coord C1 exon
chr13:7606355-7606509
Coord A exon
chr13:7605644-7605700
Coord C2 exon
chr13:7596510-7596578
Length
57 bp
Sequences
Splice sites
3' ss Seq
CCAAAACTCCTCTTTTCTAGGTA
3' ss Score
7.92
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
TTGCTGATAAATTGGAAAAAAGTGAAGGTATTCCAGTGGAAAAAGTGAGACTAACTGAAAGACCTGAAAATCTGAGTTCTAACAGTGAGATTTTGGATTGGGACATATACCAATACTATAAATTTTTGGCAGAAAGAGGAGATGTTCAGATACAA
Seq A exon
GTATCTCTTGGACAGTTGCATCTAATTGGGAGGAAAGGTCTGGATCAAGATTACTAT
Seq C2 exon
AAAGCATTATACTACTTCTTAAAGGCTGCAAAAGCTGGGAGCGCAAACGCTATGGCATTTATAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020120-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PU(0.1=0.0)
A:
PF082387=Sel1=FE(52.9=100)
C2:
PF082387=Sel1=PD(38.2=56.5),PF082387=Sel1=PU(21.6=34.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGACCTGAAAATCTGAGTTCT
R:
GTTTGCGCTCCCAGCTTTTG
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]