RnoEX6019449 @ rn6
Exon Skipping
Gene
ENSRNOG00000004852 | Sel1l2
Description
SEL1L2 ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:1311278]
Coordinates
chr3:134304758-134313561:-
Coord C1 exon
chr3:134313407-134313561
Coord A exon
chr3:134312700-134312756
Coord C2 exon
chr3:134304758-134304826
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCAAATATCATCATTTCTAGGTA
3' ss Score
7.72
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TTGCTGACAAATTGGAAAAAAGTGAAGGTATTCCCGTGGAAAAAGTGAGGCTAACCGAGAGACCTGAGAATCTGAGTTCCAACAGTGAGATTTTGGATTGGGACATATACCAATACTATAAGTTTTTGGCAGAAAGAGGAGATGTTCAGATACAA
Seq A exon
GTATCTCTTGGACAATTGCATCTAATTGGGAGAAAAGGTCTAGATCAAGATTACAGT
Seq C2 exon
AAGGCGTTATACTACTTTCTAAAGGCAGCAAAAGCTGGGAGTGCAAATGCCATGGCATTTATAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004852-'15-16,'15-15,16-16=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PU(0.1=0.0)
A:
PF082387=Sel1=FE(52.9=100)
C2:
PF082387=Sel1=PD(38.2=56.5),PF082387=Sel1=PU(21.6=34.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGCTAACCGAGAGACCT
R:
GCTTTTGCTGCCTTTAGAAAGT
Band lengths:
146-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]