HsaEX0057015 @ hg38
Exon Skipping
Gene
ENSG00000101251 | SEL1L2
Description
SEL1L2 ERAD E3 ligase adaptor subunit [Source:HGNC Symbol;Acc:HGNC:15897]
Coordinates
chr20:13877520-13886442:-
Coord C1 exon
chr20:13886288-13886442
Coord A exon
chr20:13885347-13885403
Coord C2 exon
chr20:13877520-13877588
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCCAAACTCATCATTCCTAGGTC
3' ss Score
6.62
5' ss Seq
TACGTAAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TTGCTGACACATTTGAAAAAAGTGAAGGTGTTCCAGTGGAAAAAGTGAGACTAACGGAAAGACCTGAAAATCTGAGTTCTAACAGTGAGATTTTGGATTGGGACATATACCAATACTATAAATTTTTGGCAGAAAGAGGAGATGTTCAGATACAA
Seq A exon
GTCTCTCTTGGACAATTACATCTAATTGGCAGGAAAGGTCTAGATCAGGATTACTAC
Seq C2 exon
AAAGCATTACACTACTTCTTAAAGGCAGCAAAGGCCGGGAGTGCAAATGCCATGGCATTTATAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101251_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PU(0.1=0.0)
A:
PF082387=Sel1=FE(52.9=100)
C2:
PF082387=Sel1=PD(38.2=56.5),PF082387=Sel1=PU(21.6=34.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGACTAACGGAAAGACCTGA
R:
GGCCTTTGCTGCCTTTAAGAA
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development