MmuEX6105527 @ mm9
Exon Skipping
Gene
ENSMUSG00000074764 | Sel1l2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:MGI Symbol;Acc:MGI:2684964]
Coordinates
chr2:140082708-140089259:-
Coord C1 exon
chr2:140089105-140089259
Coord A exon
chr2:140088403-140088459
Coord C2 exon
chr2:140082708-140082776
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTTTCAAAAATCATTTCTAGGTA
3' ss Score
7.66
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TTGCTGATAAATTGGAAAAAAGTGAAGGTATTCCCGTGGAAAAAGTGAGGCTAACCGAGAGACCTGAGAATCTGAGTTCCAACAGTGAGATTTTGGATTGGGACATATACCAATACTATAAATTTTTGGCAGAAAGAGGAGATGTTCAGATACAA
Seq A exon
GTATCTCTTGGACAATTACATCTAATTGGGAGAAAGGGACTAGATCAAGATTACAGT
Seq C2 exon
AAGGCGTTATACTACTTTCTAAAGGCAGCAAAAGCCGGGAGTGCAAATGCCATGGCATTTATAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074764-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PU(0.1=0.0)
A:
PF082387=Sel1=FE(52.9=100)
C2:
PF082387=Sel1=PD(38.2=56.5),PF082387=Sel1=PU(21.6=34.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGCTAACCGAGAGACCT
R:
GGCTTTTGCTGCCTTTAGAAAGT
Band lengths:
147-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: