BtaEX6063657 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020120 | SEL1L2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:15897]
Coordinates
chr13:7587208-7590419:-
Coord C1 exon
chr13:7590357-7590419
Coord A exon
chr13:7589705-7589792
Coord C2 exon
chr13:7587208-7587356
Length
88 bp
Sequences
Splice sites
3' ss Seq
AAAGTGTAATTATCTTGCAGAAT
3' ss Score
6.93
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGCAATGCAATTGGTCTTCATGGGCTCGGTCTTCTTTATTTTTATGGGAAAGGAGTTCCTGTG
Seq A exon
AATTATGCAGAAGCGCTTAAGTACTTTCAGAAAGCTGCAGAGAAGGGATGGCCCAATGCACAGTTTCAGCTAGGCTTCATGTACTACT
Seq C2 exon
CTGGCTCTGGAGTATGGAAGGATTATAAACTTGCCTTCAAATATTTTTACTTGGCATCTCAGAGTGGGCAGCCCCTAGCCATTTATTACCTGGCTGAGATGTACGCCACAGGAACAGGAGTGTTGCGATCATGCAGAACTGCTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020120-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
A:
PF082387=Sel1=PD(44.4=53.3),PF082387=Sel1=PU(33.3=40.0)
C2:
PF082387=Sel1=PD(63.9=46.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCATGGGCTCGGTCTTCT
R:
CCTGTTCCTGTGGCGTACATC
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]