DreEX6045404 @ danRer10
Exon Skipping
Gene
ENSDARG00000004581 | sel1l
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041001-122]
Coordinates
chr20:27095920-27098708:+
Coord C1 exon
chr20:27095920-27095982
Coord A exon
chr20:27096069-27096156
Coord C2 exon
chr20:27098560-27098708
Length
88 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTCCTGATTCTGCAGAAC
3' ss Score
9.56
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGTAATCCAGTTGGCCAGAGTGGCCTCGGTATGGCTTACCTGTATGGAAGGGGTGTTCCTGTG
Seq A exon
AACTATGACCTGGCCTTGAAGTATTTTCAAAAAGCTGCAGAGCAAGGATGGGTGGATGGACAGCTGCAGCTAGGAACCATGTACTACA
Seq C2 exon
ATGGCATTGGAGTGAAGCGTGATTACAAGCAGGCCCTTAAATTCTTCAACCTGGCATCGCAAGCGGGTCACATCCTAGCCTTTTATAACCTTGCCCAAATGCATGCGACAGGAACAGGGGTCATGCGCTCCTGTCACACTGCCGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004581-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
A:
PF082387=Sel1=PD(44.4=53.3),PF082387=Sel1=PU(33.3=40.0)
C2:
PF082387=Sel1=PD(63.9=46.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATCCAGTTGGCCAGAGTGG
R:
GTTCCTGTCGCATGCATTTGG
Band lengths:
177-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]