MmuEX6082372 @ mm10
Exon Skipping
Gene
ENSMUSG00000020964 | Sel1l
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:MGI Symbol;Acc:MGI:1329016]
Coordinates
chr12:91815766-91817344:-
Coord C1 exon
chr12:91817282-91817344
Coord A exon
chr12:91816221-91816308
Coord C2 exon
chr12:91815766-91815914
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTGACCTCTCCTTCTACAGAAT
3' ss Score
10.36
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
Exon sequences
Seq C1 exon
GGCAACCCCGTGGGACAGAGCGGGCTTGGAATGGCCTACCTCTACGGAAGAGGCGTTCAAGTT
Seq A exon
AATTATGACCTGGCCCTCAAGTATTTCCAGAAAGCTGCTGAGCAAGGCTGGGTGGACGGGCAGCTGCAGCTCGGCTCTATGTACTACA
Seq C2 exon
ATGGCATTGGAGTCAAGAGAGATTATAAGCAGGCCTTGAAGTATTTTAATCTGGCTTCTCAAGGAGGCCATATCTTGGCTTTCTATAACCTCGCACAGATGCACGCCAGCGGCACAGGGGTGATGCGGTCCTGTCACACTGCAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020964-'27-22,'27-21,28-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
A:
PF082387=Sel1=PD(44.4=53.3),PF082387=Sel1=PU(33.3=40.0)
C2:
PF082387=Sel1=PD(63.9=46.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATGGCCTACCTCTACGG
R:
CAGTGTGACAGGACCGCATC
Band lengths:
178-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types