GgaEX6038747 @ galGal3
Exon Skipping
Gene
ENSGALG00000010581 | SEL1L
Description
NA
Coordinates
chr5:43388056-43389827:-
Coord C1 exon
chr5:43389765-43389827
Coord A exon
chr5:43388457-43388544
Coord C2 exon
chr5:43388056-43388204
Length
88 bp
Sequences
Splice sites
3' ss Seq
TGGACCCAATCTTCCTGCAGAAC
3' ss Score
9.05
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGTAATCCAGTTGGGCAGAGTGGATTAGGAATGGCTTACCTCTATGGAAGAGGTGTTCCAGTG
Seq A exon
AACTATGAGCTAGCTCTGAAGTATTTCCAGAAGGCTGCAGAACAGGGATGGGTTGATGGACAACTTCAGCTGGGTTCCATGTATTACA
Seq C2 exon
ATGGTATTGGAGTCAAGAGAGACTATAAACAAGCTTTGAAATATTTTAATTTGGCCTCCCAGGGTGGCCATATTCTGGCTTTTTATAATCTGGCTCAGATGCATGCTACTGGCACTGGAGTGATGCGTTCTTGTCATACTGCTGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010581-'18-19,'18-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
A:
PF082387=Sel1=PD(44.4=53.3),PF082387=Sel1=PU(33.3=40.0)
C2:
PF082387=Sel1=PD(63.9=46.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGTTGGGCAGAGTGGAT
R:
CCAGTAGCATGCATCTGAGCC
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]