BtaEX6055349 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008083 | SEL1L
Description
Bos taurus sel-1 suppressor of lin-12-like (C. elegans) (SEL1L), mRNA. [Source:RefSeq mRNA;Acc:NM_001206908]
Coordinates
chr10:93916257-93918170:-
Coord C1 exon
chr10:93918108-93918170
Coord A exon
chr10:93916719-93916806
Coord C2 exon
chr10:93916257-93916405
Length
88 bp
Sequences
Splice sites
3' ss Seq
TGTGACCTCTTTTTCTCCAGAAT
3' ss Score
10.04
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GGCAACCCAGTTGGACAGAGTGGGCTTGGAATGGCTTACCTCTACGGGAGAGGAGTTCAAGTT
Seq A exon
AATTATGATTTGGCACTGAAGTATTTCCAGAAAGCTGCTGAACAAGGCTGGGTGGACGGGCAGCTGCAGCTTGGCTCCATGTACTATA
Seq C2 exon
ACGGCATTGGAGTCAAGAGGGATTACAAACAAGCCTTGAAGTATTTTAACCTAGCTTCACAGGGAGGCCATATCTTGGCTTTCTACAACCTGGCTCAGATGCATGCCAGTGGCACTGGAGTCATGCGATCGTGTCACACTGCGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008083-'18-23,'18-22,19-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
A:
PF082387=Sel1=PD(44.4=53.3),PF082387=Sel1=PU(33.3=40.0)
C2:
PF082387=Sel1=PD(63.9=46.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTTGGAATGGCTTACCTC
R:
GACACGATCGCATGACTCCAG
Band lengths:
177-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]