RnoEX6029502 @ rn6
Exon Skipping
Gene
ENSRNOG00000004464 | Sel1l
Description
SEL1L ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:620147]
Coordinates
chr6:115582467-115583929:-
Coord C1 exon
chr6:115583867-115583929
Coord A exon
chr6:115582918-115583005
Coord C2 exon
chr6:115582467-115582615
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTGGAATCTCCTTCTACAGAAT
3' ss Score
6.65
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
Exon sequences
Seq C1 exon
GGCAACCCGGTGGGACAGAGCGGACTTGGAATGGCCTACCTCTATGGAAGAGGAGTTCAAGTT
Seq A exon
AATTATGACCTGGCACTCAAGTATTTCCAGAAAGCTGCTGAGCAAGGCTGGGTGGACGGGCAGCTGCAGCTTGGCTCTATGTACTACA
Seq C2 exon
ATGGCATTGGAGTCAAGAGAGATTATAAACAGGCCTTGAAGTATTTTAATTTAGCTTCTCAGGGAGGCCATATCTTGGCTTTCTATAACCTAGCACAGATGCACGCCAGCGGCACAGGGGTGATGAGATCCTGCCACACTGCAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004464-'27-23,'27-22,28-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
A:
PF082387=Sel1=PD(44.4=53.3),PF082387=Sel1=PU(33.3=40.0)
C2:
PF082387=Sel1=PD(63.9=46.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGAGCGGACTTGGAATGG
R:
AGGATCTCATCACCCCTGTGC
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]