MmuEX6105531 @ mm9
Exon Skipping
Gene
ENSMUSG00000074764 | Sel1l2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:MGI Symbol;Acc:MGI:2684964]
Coordinates
chr2:140071082-140074352:-
Coord C1 exon
chr2:140074290-140074352
Coord A exon
chr2:140073673-140073760
Coord C2 exon
chr2:140071082-140071230
Length
88 bp
Sequences
Splice sites
3' ss Seq
ACAGTGTAATTATCTTGCAGAAT
3' ss Score
8.1
5' ss Seq
ACTGTAGGT
5' ss Score
4.15
Exon sequences
Seq C1 exon
GGCAACGCAATTGGCCTTCATGGACTTGGTCTCCTTTACTTCCATGGAAAAGGTGTTCCTGTG
Seq A exon
AATTATGGTGAAGCACTTAAATACTTCCAGAAAGCTGCGGAGAAGGGATGGCCTAATGCACAGTTCCAGCTGGGCTTCATGTACTACT
Seq C2 exon
CTGGCTCTGGAGTATGGAAGGATTATAAGCTTGCCTTCAAATACTTTTACTTGGCATCTCAGAGTGGGCAGCCTCTTGCCATTTATTATCTAGCCGAGATGTACGCAACTGGCACTGGAGTGCTGAGATCATGCAGAACGGCCGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074764-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
A:
PF082387=Sel1=PD(44.4=53.3),PF082387=Sel1=PU(33.3=40.0)
C2:
PF082387=Sel1=PD(63.9=46.0),PF082387=Sel1=PU(69.4=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGCAATTGGCCTTCATGG
R:
CAGTGCCAGTTGCGTACATCT
Band lengths:
178-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: