BtaEX6063880 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17919494-17921501:-
Coord C1 exon
chr13:17921431-17921501
Coord A exon
chr13:17920573-17920666
Coord C2 exon
chr13:17919494-17919606
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTTTAAAATCTGCATTTTAGGCT
3' ss Score
7.99
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
TTGCAAGAAGCACAGGATCAACTTACAGAGGCTGTGAGATGTGCTGAGAAAACACAGGATCGCGTCCAAAA
Seq A exon
GCTTGAAATTGAAAATGCCGAGTTACAAACTACAGTCAAAAAGCAAGCGGGCAAAATTGAACAGCTTCAGAAAAACCTGTTAAGTACAAGATCG
Seq C2 exon
TCTGAGGATGAAAAGGAACAATTAAAGAAATACATTGAATTAAAACAATCTCTGGAAAATAGCTTGGACCAAGAAAAGAAGAAAAACAGTGAGTTAGAAAAAGAGATTACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288-'29-30,'29-29,30-30=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.344 C2=0.263
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAAGCACAGGATCAACT
R:
ACTGTTTTTCTTCTTTTCTTGGTCCA
Band lengths:
159-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]