MmuEX6006494 @ mm10
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118515781-118518411:-
Coord C1 exon
chr6:118518341-118518411
Coord A exon
chr6:118517896-118517989
Coord C2 exon
chr6:118515781-118515893
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATTTTAAAATATAATTTTAGGCT
3' ss Score
5.92
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTGCAGGAGGCGCGGGATCAACACAGAGAGGCTGTACACCATGCTGAGAAGATGGAAGACCACCTACAAAA
Seq A exon
GCTTGAACTTGAAAAATCCAAGTTCGAAATTACAATTAAAAAGCAATCAGAGGAAATTGATCAACTTCAGGAAAACCTGTCAAGGGTGAATTTG
Seq C2 exon
TCTGAAGAGGATAAGGAAAAACTGCAGAAACTTACCGAGTTGAAGGAGTCTCTGGAATGTACTGTGGATCAAGAACAGAAGAGAAGCAGTGCGTTAGAAAAAGAACTGGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'34-41,'34-40,36-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.958 A=0.250 C2=0.158
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGATCAACACAGAGAGGCT
R:
TGCCAGTTCTTTTTCTAACGCAC
Band lengths:
170-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types