RnoEX0009603 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150560519-150563102:-
Coord C1 exon
chr4:150563032-150563102
Coord A exon
chr4:150562605-150562698
Coord C2 exon
chr4:150560519-150560631
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTTTTAAAATACAATTTTAGGCT
3' ss Score
6.72
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTGCAAGAGGCGCAGGACCAACACAGAGAGGCTGTTCAGCGCGCTGAGAAGATGCAGGACCACCTACAAAA
Seq A exon
GCTTGAACTTGAAAATTCCAAGTTCAAAATTACAATAAAAACGCAATCAGAGGAAATTGAACAACTTCAGGAAAACCTGTCAAATGGGAATTTG
Seq C2 exon
TCTGAAGAGGATCAGGAAAAACTGAAGAAGCTTACGGAGTTGAAAGAGTCCCTGGAATATACTTTGGATCAAGAACAGAAGAGAAGCGACGCATTAGAAAAGGAACTGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'39-37,'39-36,40-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=0.406 C2=0.395
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACCAACACAGAGAGGCT
R:
CAGTTCCTTTTCTAATGCGTCGC
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]