GgaEX1002191 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24099118-24100760:+
Coord C1 exon
chr1:24099118-24099191
Coord A exon
chr1:24099387-24099480
Coord C2 exon
chr1:24100683-24100760
Length
94 bp
Sequences
Splice sites
3' ss Seq
GGTCTGTGTTTTTCTTTAAGACT
3' ss Score
6.15
5' ss Seq
TCAGTAAGC
5' ss Score
5.59
Exon sequences
Seq C1 exon
AAACTGCAAGACCTTCTGTTAGCAACTTCTGGAACCAATACTACTATAAAACAACTGGAAGAACATGTACAACG
Seq A exon
ACTTGAAATTGAAAATGCCAGATTGGAAGCTGCAGCCAAACAACAAACCAATAGAATTGAAGCTCTTCAGAAGGACCTGCAAGCCTCAACCTCA
Seq C2 exon
GTTCATAATCGACTAGAGGACTTGATAACTGGTTTACGGACAGCGCAGACAGCTGCAGAAGAATACCAACATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104-'33-34,'33-33,35-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.469 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGCAAGACCTTCTGTTAGCA
R:
TGCTGATGTTGGTATTCTTCTGCA
Band lengths:
151-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]