BtaEX6064170 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008056 | GAD2
Description
Bos taurus glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) (GAD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001205723]
Coordinates
chr13:26944403-26950365:+
Coord C1 exon
chr13:26944403-26944493
Coord A exon
chr13:26945052-26945164
Coord C2 exon
chr13:26950250-26950365
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGGCCATGACGGTGTTTCAGGTT
3' ss Score
6.06
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
GACATCCAAGGTATTTCAATCAACTTTCTACTGGACTGGATATGGTTGGATTAGCAGCAGACTGGCTGACATCAACAGCAAACACTAACAT
Seq A exon
GTTCACCTATGAAATCGCTCCAGTATTTGTGCTTTTGGAATATGTCACGCTAAAGAAAATGAGAGAAATCATTGGCTGGCCTGGGGGCTCTGGCGATGGGATATTTTCTCCTG
Seq C2 exon
GTGGCGCTATATCCAACATGTACGCCATGCTGATTGCGCGCTTTAAAATGTTCCCGGAAGTCAAGGAGAAAGGAATGGCTGCGGTCCCCAGGCTCATTGCCTTCACGTCTGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008056-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(8.1=100)
A:
PF0028214=Pyridoxal_deC=FE(10.2=100)
C2:
PF0028214=Pyridoxal_deC=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCCAAGGTATTTCAATCAACT
R:
TCAGACGTGAAGGCAATGAGC
Band lengths:
203-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]