GgaEX1025890 @ galGal4
Exon Skipping
Gene
ENSGALG00000007588 | GAD2
Description
glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) [Source:HGNC Symbol;Acc:HGNC:4093]
Coordinates
chr2:16172200-16176142:-
Coord C1 exon
chr2:16176052-16176142
Coord A exon
chr2:16175102-16175214
Coord C2 exon
chr2:16172200-16172315
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGGGCATTACTACGTTTCAGGTT
3' ss Score
4.8
5' ss Seq
CTGGTACAT
5' ss Score
4.22
Exon sequences
Seq C1 exon
GGCATCCTAGATATTTTAATCAACTTTCAACTGGATTGGACATGGTTGGGTTGGCAGCAGACTGGCTGACATCAGCAGCAAACACTAACAT
Seq A exon
GTTCACCTATGAAATTGCTCCAGTGTTTGTACTTTTGGAATATGTCACGCTACGGAAAATGAGAGAGATGGTTGGCTGGCCAGGGGGCTGTGGCGATGGGATATTTTCACCTG
Seq C2 exon
GTGGTGCCATATCTAACATGTATGCTATGTTGATTGCACGTTTCAAGATGTTCCCAGAAGTTAAAGAAAAAGGAATGGCAGCTATTCCCAGACTGGTTGCCTTCACATCTGAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007588-'3-2,'3-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(8.0=100)
A:
PF0028214=Pyridoxal_deC=FE(10.2=100)
C2:
PF0028214=Pyridoxal_deC=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTAATCAACTTTCAACTGGATTGG
R:
GTGTTCAGATGTGAAGGCAACC
Band lengths:
194-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]