RnoEX6054393 @ rn6
Exon Skipping
Gene
ENSRNOG00000018200 | Gad2
Description
glutamate decarboxylase 2 [Source:RGD Symbol;Acc:2653]
Coordinates
chr17:89178343-89185372:+
Coord C1 exon
chr17:89178343-89178433
Coord A exon
chr17:89178906-89179018
Coord C2 exon
chr17:89185257-89185372
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGGTCATTTATGTATTTCAGGTT
3' ss Score
8.91
5' ss Seq
CTGGTATAT
5' ss Score
3.72
Exon sequences
Seq C1 exon
GGCATCCCCGATATTTTAATCAGCTGTCTACCGGATTGGATATGGTTGGATTAGCAGCAGATTGGTTGACATCAACAGCAAACACGAACAT
Seq A exon
GTTTACCTATGAGATCGCCCCTGTATTTGTACTACTGGAATATGTGACACTAAAGAAAATGAGGGAAATCATTGGCTGGCCAGGAGGCTCTGGCGATGGAATCTTTTCTCCTG
Seq C2 exon
GTGGTGCCATCTCCAACATGTACGCCATGCTCATTGCCCGCTATAAGATGTTTCCAGAAGTCAAGGAAAAGGGGATGGCGGCGGTGCCCAGGCTCATCGCATTCACGTCAGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018200-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(8.1=100)
A:
PF0028214=Pyridoxal_deC=FE(10.2=100)
C2:
PF0028214=Pyridoxal_deC=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCCCCGATATTTTAATCAGC
R:
GCTCTGACGTGAATGCGATGA
Band lengths:
205-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]