HsaEX6087903 @ hg38
Exon Skipping
Gene
ENSG00000136750 | GAD2
Description
glutamate decarboxylase 2 [Source:HGNC Symbol;Acc:HGNC:4093]
Coordinates
chr10:26223887-26229777:+
Coord C1 exon
chr10:26223887-26223977
Coord A exon
chr10:26224539-26224651
Coord C2 exon
chr10:26229662-26229777
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGGCCATTACTACATTTCAGGTT
3' ss Score
5.93
5' ss Seq
CCGGTACAT
5' ss Score
5.7
Exon sequences
Seq C1 exon
GGCATCCTAGATACTTCAATCAACTTTCTACTGGTTTGGATATGGTTGGATTAGCAGCAGACTGGCTGACATCAACAGCAAATACTAACAT
Seq A exon
GTTCACCTATGAAATTGCTCCAGTATTTGTGCTTTTGGAATATGTCACACTAAAGAAAATGAGAGAAATCATTGGCTGGCCAGGGGGCTCTGGCGATGGGATATTTTCTCCCG
Seq C2 exon
GTGGCGCCATATCTAACATGTATGCCATGATGATCGCACGCTTTAAGATGTTCCCAGAAGTCAAGGAGAAAGGAATGGCTGCTCTTCCCAGGCTCATTGCCTTCACGTCTGAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136750_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.002 C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(25.6=100)
A:
PF0028214=Pyridoxal_deC=FE(10.2=100)
C2:
PF0028214=Pyridoxal_deC=FE(10.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCCTAGATACTTCAATCAACT
R:
TCAGACGTGAAGGCAATGAGC
Band lengths:
203-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains