BtaEX6064423 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001552 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr13:33507050-33515090:+
Coord C1 exon
chr13:33507050-33507402
Coord A exon
chr13:33514805-33514923
Coord C2 exon
chr13:33515004-33515090
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTGTCTCGTTTTATGTTCAGCAT
3' ss Score
6.37
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGTCTTACTGGACAGAGCGCACTCAGACTACGACAGCGTGTTTCGCCATCTGGATCTGGACATGCTTTCCTCACCACAACATTCTCCAGTCAATCAGTCTGCCAATACCTCAGAAACAAATACCTCGGACAAATCTTTCTCTAAAGACCTCAGTCAGATACTCGTCAATATCAAATCATGTAGATGGCGGCATTTTAGGCCTCGGACACCATCCCTACATGACAGTGACAATGATGAGCTCTCCTGTCGAAAACTGTATAGGAGTATAAATCGAACAGGCACAGCACAACCCGGGACCCAGACATGCAGTACCTCTACGCAAAGCAAAAGCAGCAGTGGTTCAGCACACTTTG
Seq A exon
CATTTACAGCCGAACAATACCAGCAACATCAACAGCAGCTGGCACTCATGCAGAAACAGCAGCTTGCACAAATTCAGCAACAGCAAGCAACTAGTAATTCCTCCACCACCGTGCCACAG
Seq C2 exon
AACCTTGCATCTAACCAGCAGAAAAGTGGCTTTCGCCTGAATCCACATCATAGCCACTCTATACAGGGTTTAGAAAGAACATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001552-'14-15,'14-13,16-15=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.517 A=0.600 C2=0.862
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(0.1=0.0)
A:
PF067527=E_Pc_C=PU(14.9=97.5)
C2:
PF067527=E_Pc_C=FE(10.7=100)
Main Skipping Isoform:
ENSBTAT00000002038fB2474
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTCAGTCAGATACTCGTCA
R:
CGAAAGCCACTTTTCTGCTGG
Band lengths:
244-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]