DreEX6070683 @ danRer10
Exon Skipping
Gene
ENSDARG00000101579 | epc1a
Description
enhancer of polycomb homolog 1 (Drosophila) a [Source:ZFIN;Acc:ZDB-GENE-070629-5]
Coordinates
chr12:40966457-40972297:+
Coord C1 exon
chr12:40966457-40966830
Coord A exon
chr12:40971974-40972080
Coord C2 exon
chr12:40972159-40972297
Length
107 bp
Sequences
Splice sites
3' ss Seq
CATTAGTGTTTTTATTCCAGCGT
3' ss Score
5.34
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ATTTCATCTGGACCGGGCCTATTCGGATTTGAACGGATTATTCCAAAGTCTGGACACTGATTCGGAGCCGGACTTCTCTTTCCCTGCTTCTCCTCTCCATACGGAAAGCACTTCCCAGAGCGTTACCTCAACCCACACATCCTCTACGCTACAAACGTCTTCTTCCTCTCACACTGCATATTCAGACCTTAGACAAGTCCTCCGCAGCATCAGATCATGTCGCTGGAGGCACTTTAAACCACGGACACTAACCAGCCAGTCGGGCACAGGAGATGCTCCGACTCGGAGGGCGATTAAAGGGTTAATCCGGGGCGGCGCAGGGCCGGGTGGCAGCACGATGGGCAGGACAGCAGGAATGGGACCACCTGCAGTAG
Seq A exon
CGTTCACAGCTGAGCAGTATCAGCAGCATCAAGAACAGCTGGCTCTTATGCAGAAACAGCAGCTGGAGCAGATTCAACATCAGGCCAACAACAGCGCCTCCAGTCAG
Seq C2 exon
TCTCTCGTGTCTAAGACGCTGGACTCTGTCAGCGCTCAGTTTGCGGCCTCTGCACTCATGACCTCTGACCAGCTACTGACCCTGAAGGTCAAAGAGGACGGCGCAGGAGGTGGAGTTAACGGAGTCATTCAGGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101579-'12-13,'12-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.659 A=0.861 C2=0.128
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(0.1=0.0)
A:
PF067527=E_Pc_C=PU(16.1=97.2)
C2:
PF067527=E_Pc_C=FE(21.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTGGAGGCACTTTAAACC
R:
GCCGTCCTCTTTGACCTTCAG
Band lengths:
257-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]