RnoEX0032466 @ rn6
Exon Skipping
Gene
ENSRNOG00000014834 | Epc1
Description
enhancer of polycomb homolog 1 [Source:RGD Symbol;Acc:2324280]
Coordinates
chr17:57308179-57316917:-
Coord C1 exon
chr17:57316565-57316917
Coord A exon
chr17:57309799-57309917
Coord C2 exon
chr17:57308179-57308320
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTGTTTTATGTTCAGCAT
3' ss Score
7.17
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGTCTTGCTGGACAGAGCGCATTCAGACTATGACAGTATGTTTCACCACCTGGATCTGGACATGCTTTCCTCACCACAACCTTCTCCAGTCAATCAGTTTGCCAATACCTCAGAAACCAATACCTCGGACAGACCTTCCTCTAAAGACCTCAGTCAGATACTAGTCGATATCAAATCATGTAGATGGCGGCACTTTAGGCCCCGGACACCATCCCTTCCTGACAGTGACAGTGGTGAGCTCTCCAGTAGAAAGTTACACAGAAGTATAAGTCGAGCAGGACCAGCGCAGCCTGGGGCCCACACGTGCAGCGCCTCCACACAGAGCAGAAGTAGCAGTGGCTCGACACACTGTG
Seq A exon
CATTTACAGCCGAGCAGTACCAGCAGCACCAGCAGCAACTGGCACTCATGCAGCAGCAGCAGCTTGCACAAACTCAGCAGCAGCAAGCAAATAGCAGTTCCTCCACCGCCGCTCCACAG
Seq C2 exon
GGTTTTGTTTCTAAGACGTTGGATTCTGCCAGTGCACAGTTCGCTGCTTCTGCTTTAATGACGTCAGAACAGCTGATGGGATTCAAGATGAAGGATGATGTGGTGCTTGGGATTGGGGTGAATGGCGTCCTTCCCGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014834_MULTIEX1-3/4=1-C2
Average complexity
ME(3-4[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.697 A=0.850 C2=0.062
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(0.1=0.0)
A:
PF067527=E_Pc_C=PU(16.8=97.5)
C2:
PF067527=E_Pc_C=FE(20.3=100)
Main Skipping Isoform:
ENSRNOT00000019968fB4886
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGACAGTGGTGAGCTCT
R:
ATTCACCCCAATCCCAAGCAC
Band lengths:
255-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]