DreEX6028767 @ danRer10
Exon Skipping
Gene
ENSDARG00000060054 | epc1b
Description
enhancer of polycomb homolog 1 (Drosophila) b [Source:ZFIN;Acc:ZDB-GENE-090609-1]
Coordinates
chr2:43781265-43782986:+
Coord C1 exon
chr2:43781265-43781629
Coord A exon
chr2:43781751-43781872
Coord C2 exon
chr2:43782854-43782986
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTGTGTGTTTGTAGCTT
3' ss Score
8.54
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGTTTTATTGGACCGAGCCCACTCTGAATGGGATACTGTGTATCATGGGCTGGACCCGGATTCTCCTGCATTCCCATCACTGTCTCCCACCCAGCAGCAGCCCAGCACAGATACCTCACACACCAGCACAGATACCTCTGCCCCCTCCGCCACTCCACCTGACCTCACGCAAATCCTGCTCAACATCAAAGCCTGCCGCTGGAGGCATTTCAAGCCTCGGACGGCACCGCCAGATGACCCTGACAATCCTGAGCACTGGTCCACACGGAGGCCCCGCCGCGGCTTCCTCATCCGCCCAATCCGCACGCTTCAGACGCAGAGAGGCCCCGCCTCTATTAGACCACCTCCCCCTCCACCCACACCGG
Seq A exon
CTTTCACCGCAGAGCAGTATCAGCAGCACCAGGAGCAGCTTGTACTGATGCAGAAACAGCAGCTTGAACAAGTTCAGCAGCATCAGCAGACCGGCAGCTCTGCCGTCACCAACAACCCACAG
Seq C2 exon
AGTTTGGTGTCAAAGACGATAGACGCTGCCAGCGCTCAGTTTGCTGCATCTGCATTAGTAACTCATGAGCAGCTGTTGGCGCTCAAGAGTAAAGATGAGGGAGTTGGTGTTAATGGAGTCGTCTCAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060054-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.821 A=1.000 C2=0.222
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(0.1=0.0)
A:
PF067527=E_Pc_C=PU(17.9=97.6)
C2:
PF067527=E_Pc_C=FE(19.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTGACCTCACGCAAATC
R:
TGGCAGCGTCTATCGTCTTTG
Band lengths:
242-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]