MmuEX0017055 @ mm10
Exon Skipping
Gene
ENSMUSG00000024240 | Epc1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278322]
Coordinates
chr18:6440049-6449257:-
Coord C1 exon
chr18:6448905-6449257
Coord A exon
chr18:6441122-6441243
Coord C2 exon
chr18:6440049-6440190
Length
122 bp
Sequences
Splice sites
3' ss Seq
GTCTCCTTATTTATGTTCAGCAT
3' ss Score
5.89
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGTCGTGCTGGACAGAGCGCATTCAGACTATGACAGTATGTTTCACCACCTGGATTTGGACATGCTTTCCTCACCACAACCTTCTCCAGTCAATCAGTTTGCCAATACCTCAGAACCCAATACCTCGGACAGATCTTCCTCTAAAGACCTCAGTCAGATACTAGTCGATATCAAATCATGTAGATGGCGGCACTTTAGGCCTCGGACACCATCCCTGCCTGACAGTGACAGTGGTGAACTCTCCAGTAGAAAGTTACACAGGAGTATCAGTCGAGCAGGAGCAGCACAGCCTGGGGCCCACACGTGCAGCACCTCCACCCAGAACAGAAGTAGCAGTGGCTCAGCACACTGTG
Seq A exon
CATTCACAGCCGAACAGTACCAGCAGCACCAGCAGCAGCTGGCACTCATGCAGCAGCAGCAGCTTGCGCAGACTCAGCAGCAGCAGCAAGCAAATAGTAGTTCCTCTGCCGCCGCGCAACAG
Seq C2 exon
GGTTTTGTTTCTAAGACGTTGGACTCTGCTAGTGCACAGTTTGCTGCTTCTGCTTTGATGACGTCGGAACAGCTGCTGGGGTTCAAGGTGAAGGATGATGTGGTGCTCGGGCTCGGGGTGAATGGCGTCCTTCCTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024240_MULTIEX1-7/7=5-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.704 A=0.797 C2=0.010
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(0.1=0.0)
A:
PF067527=E_Pc_C=PU(17.2=97.6)
C2:
PF067527=E_Pc_C=FE(20.2=100)
Main Skipping Isoform:
ENSMUST00000028100fB1496
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTAGGCCTCGGACACCAT
R:
CTTCACCTTGAACCCCAGCAG
Band lengths:
255-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types