BtaEX6064428 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001552 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr13:33502391-33504949:+
Coord C1 exon
chr13:33502391-33502539
Coord A exon
chr13:33503657-33503816
Coord C2 exon
chr13:33504773-33504949
Length
160 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTCATACCATTTCAGGTA
3' ss Score
11.01
5' ss Seq
AAGGTGATC
5' ss Score
4.41
Exon sequences
Seq C1 exon
AATCGCAAAAATGATGAAGCCTCTTATGAAAAAATGCTTAAGCTGCGTCGAGACCTAAGCCGGGCTGTTACTATTCTAGAGATGATAAAAAGAAGAGAAAAGAGTAAAAGAGAGCTATTGCACTTAACACTGGAAATTATGGAAAAGAG
Seq A exon
GTATAATTTGGGTGACTACAGTGGGGAGATCATGTCTGAGGTCATGGCTCAGAGGCAGCCAGTGAAGCCCACATACACCATCCCCCTCATCCCCATCGCCAACAGCAGTCAGTTCAAACACCAGGAGGCGATGGACGTGAAGGAATTTAAAGTTAATAAG
Seq C2 exon
CAAGATAAGGCCGATCTTATCCGACCTAAACGTAAATATGAAAAGAAGCCCAAAGTCTTACCTTCGTCTGCTGCTGCTGCTCCTCAACAGGCCAGCCCCACCACGCTGCCGGTCTTCAACGCTAAAGACCTGAACCAGTATGACTTCCCCAGCTCAGATGAAGAGCCTCTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001552-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.370 C2=0.661
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTTAAGCTGCGTCGAGAC
R:
TCTTTAGCGTTGAAGACCGGC
Band lengths:
244-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]