GgaEX1022644 @ galGal3
Exon Skipping
Gene
ENSGALG00000007169 | EPC1
Description
NA
Coordinates
chr2:14065584-14068624:+
Coord C1 exon
chr2:14065584-14065732
Coord A exon
chr2:14067004-14067163
Coord C2 exon
chr2:14068448-14068624
Length
160 bp
Sequences
Splice sites
3' ss Seq
TTATTATCTTCTGATTACAGGTA
3' ss Score
8.6
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AATCGAAAAAATGATGAAGCATCCTATGAGAAGATGCTTAAACTGCGTCGAGACCTGAGTCGTGCAGTAACCATCCTGGAGATGATAAAGAGAAGGGAAAAAAGCAAGAGGGAGTTGCTGCATTTAACACTGGAAATTATCGAAAAGAG
Seq A exon
GTATAATTTGGGTGATTACAGTGGAGAGATTGTGTCTGAGGTCATGGCACAGCGGCAGCCAATGAAACCTACCTATGCTATTCCCATCATTCCTGTGACTAACAGCAGTCCTTTCAAACATCAAGAAACTATGGAACTGAAAGAATATAAAGTTAACAAA
Seq C2 exon
CAGGATAAATCTGATGTTATTCGGCCTAAAAGAAAGTATGAGAAGAAGCCAAAAGTCTTACCTTCGTCTGCTGCTGCTACTCCTCAACAGACGAGTCCTGCTGCACTGCCAGTCTTCAATGCTAAAGATTTGAATCAGTATGATTTCCCTAGCTCGGATGAAGAACCCCTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007169-'6-9,'6-8,7-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=0.593 C2=0.780
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTGCAGTAACCATCCTGG
R:
GGTTCTTCATCCGAGCTAGGG
Band lengths:
258-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]