RnoEX0032458 @ rn6
Exon Skipping
Gene
ENSRNOG00000014834 | Epc1
Description
enhancer of polycomb homolog 1 [Source:RGD Symbol;Acc:2324280]
Coordinates
chr17:57318146-57321338:-
Coord C1 exon
chr17:57321190-57321338
Coord A exon
chr17:57319997-57320156
Coord C2 exon
chr17:57318146-57318319
Length
160 bp
Sequences
Splice sites
3' ss Seq
AGTTCCCTTTGTAATTTCAGGTA
3' ss Score
7.33
5' ss Seq
AAGGTTATT
5' ss Score
4.15
Exon sequences
Seq C1 exon
AATCGCAAAAACGATGAAGCCTCCTATGAGAAAATGCTTAAGCTGCGCCGGGATCTCAGCCGGGCTGTCACCATCCTGGAGATGATCAAGAGACGTGAGAAAAGTAAACGGGAGCTGCTGCACCTGACACTGGAGATTATGGAGAAGAG
Seq A exon
GTATAATTTAGGTGACTACAGTGGAGAGATCATGTCTGAGGTCATGGCACAGAGACAGCCAGTGAAGCCTACCTATGCCATCCCCATCATCCCGATTACTAACAGCAGCCAGTTCAAACACCAGGACGTCACGGATGCGAAGGAGTTCAAAGTTAACAAG
Seq C2 exon
CAAGATAAGGCTGATCTTATTCGGCCGAAGCGCAAATATGAAAAGAAGCCCAAAGTCTTACCGTCGTCTGCTGCCGCACCCCAGCAGCCAAGTCCTGCTGCACTGCCAGGCTTCAGTGCTAAAGACTTAAACCAGTACGACTTCCCCAGCTCAGATGAAGAGCCTCTGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014834-'11-9,'11-7,14-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=0.500 C2=0.810
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAATGCTTAAGCTGCGCCG
R:
TTTAGCACTGAAGCCTGGCAG
Band lengths:
243-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]