DreEX0030254 @ danRer10
Exon Skipping
Gene
ENSDARG00000101579 | epc1a
Description
enhancer of polycomb homolog 1 (Drosophila) a [Source:ZFIN;Acc:ZDB-GENE-070629-5]
Coordinates
chr12:40956240-40961306:+
Coord C1 exon
chr12:40956240-40956388
Coord A exon
chr12:40959644-40959791
Coord C2 exon
chr12:40961148-40961306
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCCACTATTTCTGATTTCAGGAA
3' ss Score
8.09
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
AACCGGAAGAACGACGAGGCGTCCTATGAGAAGATGCTCAAATTAAGAAGGGACTTGAGTCGAGCCGTCACCATCCTGGAGATGATCAAGAAGCGAGAAAAGAGCAAACGAGAACTGCTTCACCTCACACTGGAGATTGTGGAGAAGAG
Seq A exon
GAACACAGTGCCAGACTTTGGTTCGGAGGTGATGGCAGAAGCACTAGCAATGGCCAAACCTGTTTACAAGATTCCCATAATACCCTTCTCCAACAGCACTCAGTACCGCCATCAGGACCACATCGACTTTAAAGAATACAAGACCAAG
Seq C2 exon
CCTGAAAAGCCAGAGGTGGTGAGAACAAAGAGGAAGTACGAGAAAAAGCCCAAACTCCTGCCTCTCTCCGCACCGTTGCATACTGGACCTTCCCTTTTTAACCCTAAAGACCTCAACCAGTACGACTTCCCCAGCTCTGATGACGAGCCTTTTTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101579-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.200 C2=0.453
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGAGTCGAGCCGTCAC
R:
TGCGAAAAAGGCTCGTCATCA
Band lengths:
256-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]