DreEX6036459 @ danRer10
Exon Skipping
Gene
ENSDARG00000007485 | epc2
Description
enhancer of polycomb homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-802]
Coordinates
chr9:25545805-25547410:-
Coord C1 exon
chr9:25547262-25547410
Coord A exon
chr9:25546127-25546256
Coord C2 exon
chr9:25545805-25546014
Length
130 bp
Sequences
Splice sites
3' ss Seq
AAATGTTTTGTGTATTTTAGATA
3' ss Score
9.42
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AATCGCAAGAATGACGAGGCATCTTATGAGAAGATGCTGAAGCTGAGGAGAGAGTTCAGCCGAACCATAAGCATCCTGGAAATGATCAAGAAAAGAGAAAAGAGCAAACGAGAGCTGCTGCATCTGACGCTGGAAGTCTTTGAAAAAAG
Seq A exon
ATATCAGATTGGAGACTTCTCTGGTGAGATTCTCAATGAAGTCACTGTACCTCTGGCTGAGAAAACCGTTTACCCTGCTCCCATATCCCTACCCATCAGCAGTCGGCACAAGACAGAGAACAAAATTAAG
Seq C2 exon
TCACACAAAATTGGGCCCAAACACCTGCACCCCTTTCCCGTTAAGTCTGAGCCTCATTTTGACTTTGTGCGTTCTCATAAGAAGTACAACAAGAGGCCCAAACTTGATACGTTTCGCCAGACTGGTTGGCCAGAGCGAATACAGACCATTAACAAGGCAGACATTAAACAGTACGACTTCCACAGCTCTGGAGAAGAGGATTATCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007485-'13-8,'13-7,14-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.295 C2=0.271
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAGAGAGTTCAGCCGA
R:
CTGTATTCGCTCTGGCCAACC
Band lengths:
251-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]