MmuEX6101136 @ mm9
Exon Skipping
Gene
ENSMUSG00000069495 | Epc2
Description
enhancer of polycomb homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278321]
Coordinates
chr2:49384368-49390864:+
Coord C1 exon
chr2:49384368-49384516
Coord A exon
chr2:49385531-49385663
Coord C2 exon
chr2:49390775-49390864
Length
133 bp
Sequences
Splice sites
3' ss Seq
TACTTTATTGTCTTTTGAAGATA
3' ss Score
8.03
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AACCGTAAGAATGATGAAGCTTCTTATGAAAAGATGCTGAAGCTGAGGCGGGAGTTCAGCAGAGCCATAACAATTTTGGAAATGATTAAGAGAAGAGAAAAAACCAAACGGGAATTATTGCACTTAACACTGGAAGTTGTGGAAAAAAG
Seq A exon
ATATCATTTGGGAGACTATGGGGGTGAAATCCTTAATGAAGTGAAAGTTAATAGATCAGAAAAAGAGTTATATGCCAGTCCAGCAACCCTTCATAATGGAAATCATCACAAAGTTCAAGAATGTAAAACTAAG
Seq C2 exon
GTGCTGTCTCCAGCTTCAGAGGCTGAGGAGGAGAATGACCCTGACGGTTCCTGTGCTTTCAGAAGACGGGCAGGATGCCAGTATTACGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069495-'6-7,'6-5,7-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.126 A=0.511 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTAAGAATGATGAAGCTTCT
R:
AGCGTAATACTGGCATCCTGC
Band lengths:
238-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: