BtaEX6009912 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018581 | EPC2
Description
Bos taurus enhancer of polycomb homolog 2 (Drosophila) (EPC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192242]
Coordinates
chr2:47547299-47550532:-
Coord C1 exon
chr2:47550384-47550532
Coord A exon
chr2:47549592-47549724
Coord C2 exon
chr2:47547299-47547490
Length
133 bp
Sequences
Splice sites
3' ss Seq
TATATTATTTCCTTTTCAAGATA
3' ss Score
7.39
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AATCGAAAGAATGATGAAGCCTCTTATGAAAAGATGTTGAAACTGAGACGAGAATTTAGTAGAGCCATAACAATTTTGGAAATGATTAAGAGAAGAGAGAAAACAAAACGAGAATTATTGCACTTAACCTTAGAAGTTGTGGAAAAAAG
Seq A exon
ATATCATTTAGGAGACTATGGTGGTGAAATCCTTAATGAAGTGAAGATCAATAGATCAGAAAAAGAATTATATACCACTCCAGCAACTCTTCATAATGGAAATCATCACAAAGTCCAAGAATGTAAAACTAAA
Seq C2 exon
CACCCGCATCATTTGTCTTTGAAAGAAGAGGCTTCTGATGTGGTTCGTCAAAAGAAGAAGTACCCAAAGAAGCCTAAAGCAGAGGCTGTGCTAACATCTCAACAGCCCACTCCTGAGACCTTGCCTGTGATCAATAAGAGTGACCTTAAGCAATATGACTTTCACAGCTCAGAGGAAGATGAATTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018581-'10-8,'10-7,11-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.578 C2=0.812
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTTGAAACTGAGACGAGA
R:
ATCACAGGCAAGGTCTCAGGA
Band lengths:
249-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]