HsaEX6015841 @ hg19
Exon Skipping
Gene
ENSG00000135999 | EPC2
Description
enhancer of polycomb homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:24543]
Coordinates
chr2:149519351-149522715:+
Coord C1 exon
chr2:149519351-149519499
Coord A exon
chr2:149520239-149520371
Coord C2 exon
chr2:149522524-149522715
Length
133 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTTACCTTTTCAAGATA
3' ss Score
6.35
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
AATCGTAAGAATGATGAAGCCTCTTATGAAAAGATGTTGAAACTGAGACGAGAATTTAGTAGAGCCATAACAATTTTGGAAATGATTAAGAGAAGAGAGAAAACAAAACGAGAATTATTGCACTTAACCTTAGAAGTTGTGGAGAAAAG
Seq A exon
ATACCATTTGGGAGACTATGGTGGTGAAATCCTTAATGAAGTAAAAATCAGTAGATCAGAAAAAGAGTTATATGCCACTCCAGCAACTCTTCATAATGGAAATCATCACAAAGTTCAAGAATGTAAAACTAAG
Seq C2 exon
CACCCTCATCATTTGTCTTTGAAAGAAGAGGCTTCTGATGTGGTTCGTCAAAAGAAGAAGTACCCAAAGAAGCCTAAAGCAGAGGCTTTGATAACATCTCAGCAACCCACTCCTGAGACATTGCCTGTGATCAATAAGAGTGACATTAAGCAATATGATTTTCACAGCTCAGATGAAGATGAATTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135999-'11-13,'11-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.511 C2=0.680
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTTGAAACTGAGACGAGA
R:
CAGGCAATGTCTCAGGAGTGG
Band lengths:
245-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)