GgaEX6043216 @ galGal3
Exon Skipping
Gene
ENSGALG00000012453 | EPC2
Description
NA
Coordinates
chr7:36377467-36379470:+
Coord C1 exon
chr7:36377467-36377615
Coord A exon
chr7:36377872-36378004
Coord C2 exon
chr7:36379279-36379470
Length
133 bp
Sequences
Splice sites
3' ss Seq
TTAATTAATTTTTTTTTAAGATA
3' ss Score
6.83
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
AATCGAAAGAATGATGAAGCGTCTTATGAGAAGATGTTGAAATTAAGAAGAGAGTTTAGCAGAGCCATAACGATTCTGGAGATGATTAAGAGGAGAGAGAAGACAAAACGCGAGTTATTGCATTTAACATTGGAAGTTGTAGAGAAAAG
Seq A exon
ATACCATTTGGGTGATTATGGAGGTGAAATTCTCAATGAAGTGAAGCTTAACAGACCTGAAAAAGAGATGAGCACAGCCGCATCCACTCTTCATAATGGAAATCATCACAAAGTTCCAGAATGTAAAATTAAG
Seq C2 exon
CATCCTCATCATTCATCTCTAAAGGAGGAGATATCAGATGTTGTACGTCAGAAGAAGAAGTATCTGAAGAAACCGAAAATGGAGTGTGTGGTAACTGCTCAACAGCCCTCTGCTGAGCCCTTGCCTGTTATCAACAAGAGTGATATCAAGCAGTATGACTTCCACAGCTCAGATGAAGATGAGTTCCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012453-'7-12,'7-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.711 C2=0.516
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAGAGAAGACAAAACGCG
R:
TGCGGGAACTCATCTTCATCTG
Band lengths:
250-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]