MmuEX6101136 @ mm10
Exon Skipping
Gene
ENSMUSG00000069495 | Epc2
Description
enhancer of polycomb homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278321]
Coordinates
chr2:49528848-49532235:+
Coord C1 exon
chr2:49528848-49528996
Coord A exon
chr2:49530011-49530143
Coord C2 exon
chr2:49532044-49532235
Length
133 bp
Sequences
Splice sites
3' ss Seq
TACTTTATTGTCTTTTGAAGATA
3' ss Score
8.03
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AACCGTAAGAATGATGAAGCTTCTTATGAAAAGATGCTGAAGCTGAGGCGGGAGTTCAGCAGAGCCATAACAATTTTGGAAATGATTAAGAGAAGAGAAAAAACCAAACGGGAATTATTGCACTTAACACTGGAAGTTGTGGAAAAAAG
Seq A exon
ATATCATTTGGGAGACTATGGGGGTGAAATCCTTAATGAAGTGAAAGTTAATAGATCAGAAAAAGAGTTATATGCCAGTCCAGCAACCCTTCATAATGGAAATCATCACAAAGTTCAAGAATGTAAAACTAAG
Seq C2 exon
CACCCTCATCATTTGTCTTTGAAAGAAGAGGCTTCTGATGTGGTTCGTCAAAAGAAGAAGTACCCAAAGAAGCCTAAGGCAGAGGCTGGGATAGCCCCTCAGCAGCCCACTCCTGAGACATTGCCTGTGATCAATAAGAGTGACATTAAGCAATATGACTTTCAGAGCTCAGACGAAGATGAATTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069495-'15-18,'15-7,20-18=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=0.548 C2=0.891
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATGCTGAAGCTGAGGCG
R:
CAATGTCTCAGGAGTGGGCTG
Band lengths:
243-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types