HsaEX6015841 @ hg38
Exon Skipping
Gene
ENSG00000135999 | EPC2
Description
enhancer of polycomb homolog 2 [Source:HGNC Symbol;Acc:HGNC:24543]
Coordinates
chr2:148761782-148765146:+
Coord C1 exon
chr2:148761782-148761930
Coord A exon
chr2:148762670-148762802
Coord C2 exon
chr2:148764955-148765146
Length
133 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTTACCTTTTCAAGATA
3' ss Score
6.35
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
AATCGTAAGAATGATGAAGCCTCTTATGAAAAGATGTTGAAACTGAGACGAGAATTTAGTAGAGCCATAACAATTTTGGAAATGATTAAGAGAAGAGAGAAAACAAAACGAGAATTATTGCACTTAACCTTAGAAGTTGTGGAGAAAAG
Seq A exon
ATACCATTTGGGAGACTATGGTGGTGAAATCCTTAATGAAGTAAAAATCAGTAGATCAGAAAAAGAGTTATATGCCACTCCAGCAACTCTTCATAATGGAAATCATCACAAAGTTCAAGAATGTAAAACTAAG
Seq C2 exon
CACCCTCATCATTTGTCTTTGAAAGAAGAGGCTTCTGATGTGGTTCGTCAAAAGAAGAAGTACCCAAAGAAGCCTAAAGCAGAGGCTTTGATAACATCTCAGCAACCCACTCCTGAGACATTGCCTGTGATCAATAAGAGTGACATTAAGCAATATGATTTTCACAGCTCAGATGAAGATGAATTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135999-'23-18,'23-17,25-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.511 C2=0.724
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTTGAAACTGAGACGAGA
R:
CAGGCAATGTCTCAGGAGTGG
Band lengths:
245-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains