BtaEX6064464 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020053 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11642]
Coordinates
chr13:34095838-34261299:-
Coord C1 exon
chr13:34261244-34261299
Coord A exon
chr13:34114899-34115099
Coord C2 exon
chr13:34095838-34095900
Length
201 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTGTTTGTATTACAGTTA
3' ss Score
7.84
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGCGGATGGCCCCAGGTGTAAGCGCAGAAAGCAGGCGAACCCGCGGCGCAATAACG
Seq A exon
TTACAAATTATAATACTGTGGTAGAAACAAACTCAGATTCAGACGATGAAGACAAACTCCACATTGTGGAAGAAGAAAGCATCACAGATGCAGCCGACTGTGAAGGCGGCGTGCCAGACGATGACCTGCCCTCAGACCAGACAGTGTTGCCCGGGAGCAGCGCAAGAGAAGGGAGCGCAAAGAGCTGCTGGGAGGACGATG
Seq C2 exon
CAGGAAAGGAAGGACAAGAAATCCTGGGGCCGGAAGCTCGGGCAGATGAAGTGGGATGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020053-'1-11,'1-9,11-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.909
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]