HsaEX0072570 @ hg38
Exon Skipping
Gene
ENSG00000148516 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11642]
Coordinates
chr10:31387124-31495838:+
Coord C1 exon
chr10:31387124-31387266
Coord A exon
chr10:31461037-31461237
Coord C2 exon
chr10:31495776-31495838
Length
201 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTGTTTGTATTACAGTTA
3' ss Score
7.84
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GACAACCTTAAACTTCCACCACAAGAGGAATATAAAGAGGTCCCTCCTGCACCAAGAAAGATCTGCAGATCTTTTTCAGTGTTCTTGGAGGTGTGGGGTGTGAGAACTTGATCAGTTTGTGTCAGCCACCTTGTTCTCTAAAG
Seq A exon
TTACAAATTATAATACTGTGGTAGAAACAAATTCAGATTCAGATGATGAAGACAAACTGCATATTGTGGAAGAAGAAAGTGTTACAGATGCAGCTGACTGTGAAGGTGTACCAGAGGATGACCTGCCAACAGACCAGACAGTGTTACCAGGGAGGAGCAGTGAAAGAGAAGGGAATGCTAAGAACTGCTGGGAGGATGACA
Seq C2 exon
CAGGAAAGGAAGGGCAAGAAATCCTGGGGCCTGAAGCTCAGGCAGATGAAGCAGGATGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148516-'23-64,'23-53,36-64
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.983 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACCTTAAACTTCCACCACA
R:
TGTACATCCTGCTTCATCTGCC
Band lengths:
205-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development