DreEX0086341 @ danRer10
Exon Skipping
Gene
ENSDARG00000013207 | zeb1b
Description
zinc finger E-box binding homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010621-1]
Coordinates
chr12:26672915-26760366:-
Coord C1 exon
chr12:26760283-26760366
Coord A exon
chr12:26683197-26683364
Coord C2 exon
chr12:26672915-26673070
Length
168 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTCTCTGTCTGCAGTGA
3' ss Score
10.07
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
CAGCATTTAGACACAGCGAAAGGATCATGGCGGATGGCCCCAGGTGTAAGCGCAGAAAGCAGGCGAACCCGAGGAGGACAAACG
Seq A exon
TGAGTAACTACAGTCATGTGCTGGAGGGCCAGTCAGACTCCGATGATGAAGATAAGCTTCACATTGTGGAGGAGGAAGGGAGTCTCCTGGACGGGGCTGACTGTGACAGCGTGGCCCCTGACGATGACCCCAACGGGACCGCTGACCCTGACGGCAGATGGGACGATG
Seq C2 exon
TGAAAGAGGAGTGCGTGTCGGATGAAGATGAGAGGAGCAGAGATGCTTTGGTTGAGGAGATGCTCCAGCAAGGAGACACCGCAGTCATCTTTCCAGAGGCTCCAGATGACGAACCGCGACAGGGCACACCAGAAACCAGCGGACATGATGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013207-'2-4,'2-2,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATTTAGACACAGCGAAAGGA
R:
TCATCATGTCCGCTGGTTTCTG
Band lengths:
234-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]