HsaEX0072570 @ hg19
Exon Skipping
Gene
ENSG00000148516 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:11642]
Coordinates
chr10:31608145-31784767:+
Coord C1 exon
chr10:31608145-31608221
Coord A exon
chr10:31749966-31750166
Coord C2 exon
chr10:31784705-31784767
Length
201 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTGTTTGTATTACAGTTA
3' ss Score
7.84
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AGACACAAGCGAGAGGATCATGGCGGATGGCCCCAGGTGTAAGCGCAGAAAGCAGGCGAACCCGCGGCGCAATAACG
Seq A exon
TTACAAATTATAATACTGTGGTAGAAACAAATTCAGATTCAGATGATGAAGACAAACTGCATATTGTGGAAGAAGAAAGTGTTACAGATGCAGCTGACTGTGAAGGTGTACCAGAGGATGACCTGCCAACAGACCAGACAGTGTTACCAGGGAGGAGCAGTGAAAGAGAAGGGAATGCTAAGAACTGCTGGGAGGATGACA
Seq C2 exon
CAGGAAAGGAAGGGCAAGAAATCCTGGGGCCTGAAGCTCAGGCAGATGAAGCAGGATGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148516_MULTIEX1-8/10=1-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACAAGCGAGAGGATCATG
R:
CTGTACATCCTGCTTCATCTGCC
Band lengths:
140-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)