BtaEX6065037 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008436 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr13:51858975-51859810:-
Coord C1 exon
chr13:51859769-51859810
Coord A exon
chr13:51859578-51859614
Coord C2 exon
chr13:51858975-51859097
Length
37 bp
Sequences
Splice sites
3' ss Seq
GTCCCTGTTTCCTTCTGCAGTGA
3' ss Score
9.89
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GTTTGAACAGGCCATCCAGGCAGCCAGCCGAGTTATTCAAAA
Seq A exon
TGAGCAGTTTGCCATCCGACGTTTCCAGTCCTTGCCG
Seq C2 exon
GATGGATTTGTCTTCAAGATGCCAGGGAAACTCAAACATCCCAGCCACTCCCGTGCTCTTGGGGAGTGGGCCAGCCGCAGAGAAGCCTTTGCCCAGAGGCCAAGCTCGGCTCCCGACCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008436-'4-6,'4-4,5-6=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=0.000 C2=0.463
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(33.3=100)
A:
PF066178=M-inducer_phosp=FE(28.6=100),PF066178=M-inducer_phosp=PU(0.1=0.0)
C2:
PF066178=M-inducer_phosp=PD(0.1=0.0),PF066178=M-inducer_phosp=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCAGCCGAGTTATTCAA
R:
CTCTGGGCAAAGGCTTCTCTG
Band lengths:
121-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]