RnoEX0018913 @ rn6
Exon Skipping
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123735644-123736439:+
Coord C1 exon
chr3:123735644-123735685
Coord A exon
chr3:123735852-123735888
Coord C2 exon
chr3:123736317-123736439
Length
37 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTGTTTTGCAGTGA
3' ss Score
10.04
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GTTTGAACAGGCCATTCAGGCAGCCAGTCGGGTCATTCAAAA
Seq A exon
TGAGCAATTTACCATAAAACGCTTCCGGTCTTTGCCA
Seq C2 exon
GATGGATATATCTTCAAGATGCCACAGAAGCTCCCTCATTCCAGCTCTGCCCGAGCTTTGGCAGAGTGGGCCAGCCGCAGAGAGGCCTTTACCCAGAGGCCCAGCTCAGCCCCTGACTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248_MULTIEX1-3/5=2-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=0.091 C2=0.659
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(5.2=100)
A:
PF066178=M-inducer_phosp=FE(2.2=100)
C2:
PF066178=M-inducer_phosp=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAGTCGGGTCATTCAAA
R:
CCTCTGGGTAAAGGCCTCTCT
Band lengths:
121-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]