MmuEX0010355 @ mm10
Exon Skipping
Gene
ENSMUSG00000027330 | Cdc25b
Description
cell division cycle 25B [Source:MGI Symbol;Acc:MGI:99701]
Coordinates
chr2:131191145-131191721:+
Coord C1 exon
chr2:131191145-131191186
Coord A exon
chr2:131191350-131191386
Coord C2 exon
chr2:131191596-131191721
Length
37 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTGTTTGTTTGCAGTGA
3' ss Score
8.14
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GTTTGAACAGGCCATTCAGGCAGCCAGTCGGGTCATTCAAAA
Seq A exon
TGAGCAGTTTACCATAAAACGCTTCCGATCCTTACCA
Seq C2 exon
GTGAGGCTGCTGGAACACAGTCCGGTGCTGCAGAGCATCACCAACTCCCGAGCACTGGACAGCTGGAGGAAAACTGAAGCAGGCTACCGAGCCGCCGCCAATAGTCCTGGGGAGGACAAAGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027330_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.000 C2=0.405
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(5.2=100)
A:
PF066178=M-inducer_phosp=FE(4.4=100)
C2:
PF066178=M-inducer_phosp=FE(15.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAGTCGGGTCATTCAAA
R:
CTCGGTAGCCTGCTTCAGTTT
Band lengths:
113-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types