BtaEX6065196 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011458 | CPXM
Description
Bos taurus carboxypeptidase X (M14 family), member 1 (CPXM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001015642]
Coordinates
chr13:52845679-52846336:+
Coord C1 exon
chr13:52845679-52845840
Coord A exon
chr13:52845994-52846103
Coord C2 exon
chr13:52846197-52846336
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTGTCCCTGTCCCAGACT
3' ss Score
7.3
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GGACTTCAGAACAGCATGTCCGGATTCGAGTCATCAAGAAGAAAAAGATCGTCATGAAGAAGCGAAAGAAGCTAACTCGCCCCACACCCCCAGTGACTGCCAGGCCTTCAGTGACCACCAGCCCTTCAGGGACCCTTGACCTCCCTGAGAAGCAAGAACCAG
Seq A exon
ACTGTCCCCCTTTGGGCCTAGAGTCCCTGCGAGTTTCAGATAACCAGCTCGATGCATCTAGTAGCCAATCCTTTGGTCTTGGACCACACAGAGGACGGCTCAACATCCAG
Seq C2 exon
TCAGGCCTGGAAGATGGTGATCTTTTTGATGGGGCCTGGTGCGCCGAGCAGCAGGATGCCGAGCCATGGCTTCAGGTGGATGCTAGGCACCCCACCCGCTTCTCGGGCATTATCACACAGGGCAGGAACTCCATCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011458-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.782 A=0.946 C2=0.085
Domain overlap (PFAM):
C1:
NO
A:
PF0075420=F5_F8_type_C=PU(14.7=56.8)
C2:
PF0075420=F5_F8_type_C=FE(32.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCATGTCCGGATTCGAG
R:
GTGCCTAGCATCCACCTGAAG
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]