HsaEX6076877 @ hg38
Exon Skipping
Gene
ENSG00000088882 | CPXM1
Description
carboxypeptidase X, M14 family member 1 [Source:HGNC Symbol;Acc:HGNC:15771]
Coordinates
chr20:2798152-2798893:-
Coord C1 exon
chr20:2798726-2798893
Coord A exon
chr20:2798428-2798537
Coord C2 exon
chr20:2798152-2798291
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTATCCCCGCCCCAGGCT
3' ss Score
7.36
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GGACCTCAGAACAGCATGTCCGGATTCGAGTCATCAAGAAGAAAAAGGTCATTATGAAGAAGCGGAAGAAGCTAACTCTAACTCGCCCCACCCCACTGGTGACTGCCGGGCCCCTTGTGACCCCCACTCCAGCAGGGACCCTCGACCCCGCTGAGAAACAAGAAACAG
Seq A exon
GCTGTCCTCCTTTGGGTCTGGAGTCCCTGCGAGTTTCAGATAGCCGGCTTGAGGCATCCAGCAGCCAGTCCTTTGGTCTTGGACCACACCGAGGACGGCTCAACATTCAG
Seq C2 exon
TCAGGCCTGGAGGACGGCGATCTATATGATGGAGCCTGGTGTGCTGAGGAGCAGGACGCCGATCCATGGTTTCAGGTGGACGCTGGGCACCCCACCCGCTTCTCGGGTGTTATCACACAGGGCAGGAACTCTGTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000088882-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.757 C2=0.106
Domain overlap (PFAM):
C1:
NO
A:
PF0075420=F5_F8_type_C=PU(14.1=54.1)
C2:
PF0075420=F5_F8_type_C=FE(32.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCAGAACAGCATGTCCG
R:
CCACCTGAAACCATGGATCGG
Band lengths:
246-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains