RnoEX0024332 @ rn6
Exon Skipping
Gene
ENSRNOG00000021220 | Cpxm1
Description
carboxypeptidase X (M14 family), member 1 [Source:RGD Symbol;Acc:1306937]
Coordinates
chr3:122918974-122919613:-
Coord C1 exon
chr3:122919452-122919613
Coord A exon
chr3:122919244-122919353
Coord C2 exon
chr3:122918974-122919113
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTGTCCTTATCCCAGGAT
3' ss Score
8.86
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
Exon sequences
Seq C1 exon
AGACCTCAGAACAGCATGTCCGACTGCGAGTCATCAAGAAGAAAAAGATCGTTGTCAAGAAGCGAAAGAAGCTAAGGCAGCCTGGTCCTCTGGTGACGGCCAGGCCTTTGGTGACCACTCACCCAGCAAAGACCCCCACTCTCCCTGAGAAACAAGAACCAG
Seq A exon
GATGTCCCCCTCTAGGCCTTGAGTCCTTGCGGGTCTCAGATAGTCAGCTGGAGGCCTCCAGCAGCCAGTCCTTCGGTCTTGGACCACACCGAGGACGGCTCAATATCCAG
Seq C2 exon
TCAGGTCTGGAGGATGGTGACCTGTACGACGGGGCTTGGTGTGCCGAGCAACAAGATAATGAGCCTTGGCTTCAGGTGGACGCCAGGAGTCCTGCCCGCTTCTCAGGAATTGTTACGCAGGGCAGAAATTCTGTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021220-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=0.676 C2=0.106
Domain overlap (PFAM):
C1:
NO
A:
PF0075420=F5_F8_type_C=PU(14.8=56.8)
C2:
PF0075420=F5_F8_type_C=FE(32.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCAGAACAGCATGTCCG
R:
GTCCACCTGAAGCCAAGGC
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]