MmuEX6105146 @ mm10
Exon Skipping
Gene
ENSMUSG00000027408 | Cpxm1
Description
carboxypeptidase X 1 (M14 family) [Source:MGI Symbol;Acc:MGI:1934569]
Coordinates
chr2:130395829-130396492:-
Coord C1 exon
chr2:130396331-130396492
Coord A exon
chr2:130396108-130396217
Coord C2 exon
chr2:130395829-130395968
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTATCCTTACCCCAGGAT
3' ss Score
8.84
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AGACCTCAGAACGGCATGTCCGGCTTCGAGTCATCAAGAAAAAAAAGATCGTTGTCAAGAAGCGAAAGAAGCTAAGGCACCCTGGTCCCTTGGGGACTGCTAGGCCTGTGGTGCCCACTCACCCAGCAAAGACCCTCACTCTCCCTGAGAAACAAGAACCAG
Seq A exon
GATGTCCCCCTCTAGGCTTGGAGTCCTTGAGGGTTTCAGATAGCCAGCTGGAGGCCTCCAGCAGCCAGTCCTTTGGTCTTGGAGCACACCGAGGACGGCTCAATATCCAG
Seq C2 exon
TCAGGTCTGGAGGACGGTGACCTGTATGATGGCGCTTGGTGCGCTGAGCAACAAGACACTGAACCTTGGCTTCAGGTGGATGCAAAGAATCCCGTCCGCTTCGCAGGAATTGTTACACAGGGCAGAAACTCTGTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027408-'4-4,'4-2,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=0.486 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
PF0075420=F5_F8_type_C=PU(14.8=56.8)
C2:
PF0075420=F5_F8_type_C=FE(32.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTCCGGCTTCGAGTCATC
R:
ACGGGATTCTTTGCATCCACC
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types