BtaEX6065612 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003061 | LAMA5
Description
laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr13:55417997-55418719:+
Coord C1 exon
chr13:55417997-55418141
Coord A exon
chr13:55418337-55418477
Coord C2 exon
chr13:55418561-55418719
Length
141 bp
Sequences
Splice sites
3' ss Seq
CCGTGCCCTCCCACCCTCAGGAG
3' ss Score
9.78
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GTGCAGACCCAACGTGGCCGGACGCCGCTGTGACACCTGTGCTCCGGGGTTCCATGGCTTCCCCAGCTGCCGCCCCTGTGACTGCCATGAGGCAGGCTCTGCGCCCGGCACGTGTGACCCCCTCACAGGCCAGTGCTACTGCAAG
Seq A exon
GAGAACGTGCAGGGCCCGAGGTGTGACCAGTGCCGCCTGGGGACATTCTCACTGGATGCTGCCAACCCCAAAGGCTGCACCCGCTGCTTCTGCTTCGGGGCCACTGACCGCTGCCGGAGCTCGACGTATGCCCGTCGTGAG
Seq C2 exon
TTTGTGGACATGGAGGGCTGGACGCTGCTGAGTGGTGACCGGCAGGTGGTGCCCCACAAGCGGCAGGAGGCGCTGATGCTTCGCGCAGACCTGCAGCGTGTGCCCGAGGCCATCCCCGAGCTGTACTGGCAGGCCCCACCCTCCTACCTGGGGGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003061-'41-44,'41-43,42-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(51.0=51.0),PF0005319=Laminin_EGF=PU(44.9=44.9)
A:
PF0005319=Laminin_EGF=PD(51.0=53.2)
C2:
PF0005213=Laminin_B=PU(8.0=20.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGACACCTGTGCTCC
R:
CCAGTACAGCTCGGGGATGG
Band lengths:
248-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]