GgaEX6023039 @ galGal4
Exon Skipping
Gene
ENSGALG00000005321 | LAMA5
Description
laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr20:8195575-8196900:-
Coord C1 exon
chr20:8196756-8196900
Coord A exon
chr20:8196108-8196248
Coord C2 exon
chr20:8195575-8195736
Length
141 bp
Sequences
Splice sites
3' ss Seq
GAGCTTTGCATGTCTTCCAGGAA
3' ss Score
7.69
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTGTAAGCCCAATGTAATTGGGCGACGGTGTGACCTCTGTGCCCCTGGCTACTACCACTATCCCAGCTGTCGGCGGTGTGACTGCCATCCTGATGGCACCGAAGTGAGCGTGTGTGACCCGGTGACGGGGCAGTGTCACTGCAAG
Seq A exon
GAAAATGTGGAGGGTCCGAGGTGTGACCAGTGCCGCCTGGGGACGTTTTCTTTGGATGCCAGCAACCCCAAGGGGTGCACCAAGTGTTTCTGCTTTGGTGCCACCAATCGCTGCCGCAGTGCTGTGAAGTACCGAGCTGAG
Seq C2 exon
TTCATCGACATGAATGGCTGGCTCTTGATGAGCAGTGACCGCCAGGAGGTGCCAACAGCCCTGAGCCTGCGGGAGCAGCTGCTCCGTGCTGATCTCAGGAACCTCCTGGATGCCTATCAGGAGCTCTACTGGGTTGCACCTAGCTCCTACCTTGGGGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005321-'41-52,'41-50,42-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(51.0=51.0),PF0005319=Laminin_EGF=PU(44.9=44.9)
A:
PF0005319=Laminin_EGF=PD(51.0=53.2)
C2:
PF0005213=Laminin_B=PU(14.7=20.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCACTATCCCAGCTGTCGG
R:
GTCCCCAAGGTAGGAGCTAGG
Band lengths:
252-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]