RnoEX6020614 @ rn6
Exon Skipping
Gene
ENSRNOG00000053691 | Lama5
Description
laminin subunit alpha 5 [Source:RGD Symbol;Acc:621023]
Coordinates
chr3:175567351-175568061:-
Coord C1 exon
chr3:175567917-175568061
Coord A exon
chr3:175567616-175567756
Coord C2 exon
chr3:175567351-175567512
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGATTGTCCCCTGCCCTTAGGAG
3' ss Score
9.82
5' ss Seq
GAGGTATCC
5' ss Score
7.59
Exon sequences
Seq C1 exon
ATGCAGACCCAATGTAGCTGGGCGTCGCTGTGACACCTGTGCACCAGGCTTCTATAGTTATCCTAGCTGTCGCCCCTGTGACTGTCATGAGGCAGGCACCATGGCCAGTGTGTGTGACCCCTTCACAGGCCAGTGCCATTGCAAG
Seq A exon
GAGAATGTACAGGGCTCCAGATGTGACCAGTGTCGCGTGGGGACCTTCTCCTTGGATGCTGCTAACCCCAAGGGCTGTACCCGCTGCTTCTGTTTCGGAGCCACAGAGCGCTGTGGAAACTCTAACTATGCCCGCCATGAG
Seq C2 exon
TTCATGGACATGGAGGGCTGGGTGCTTTTGAGCAGCGACCGACAGGTTGTACCCCACGAGCATCGGCCCGAGATGGAGCTGCTGCACGCAGATCTGCGGCTTGTGGCCGACACTTTCCCAGAGCTGTACTGGCAGGCCCCGCCCTCCTACCTGGGAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053691-'44-42,'44-41,45-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(51.0=51.0),PF0005319=Laminin_EGF=PU(44.9=44.9)
A:
PF0005319=Laminin_EGF=PD(51.0=53.2)
C2:
PF0005213=Laminin_B=PU(8.0=20.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGACACCTGTGCACCAG
R:
GTACAGCTCTGGGAAAGTGTCG
Band lengths:
247-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]